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Cafe - Cellular Fate Explorer
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HuangDDU/cafe-release
Cafe - Cellular Fate Explorer
HuangDDU/cafe-release
Cafe Document
Installation
Introduction
Introduction
Cell Fate Prediction
Data Structure
Wrapper Types
Trajectory Visualization
Metrics and Benchmark
Downstream Analysis
Tutorial
Tutorial
Quick Start
(FIX)Benchmark
(TODO)Visualization
(TODO)cellxgene-cafe
API
API
data
data
cafe.data.FateAnnData
cafe.data.MilestoneWrapper
cafe.data.WaypointWrapper
Dataset
method
method
cafe.method.FateMethod
cafe.method.CondaBackend
cafe.method.FunctionBackend
cafe.method.CFEDockerBackend
cafe.method.DynverseDockerBackend
Method List
metric
metric
cafe.metric.calculate_metrics
cafe.metric.metric_pseudotime
cafe.metric.metric_pseudotime
Table of contents
metric_pseudotime
cafe.metric.metric_velocity
cafe.metric.metric_embedding
cafe.metric.metric_topology
cafe.metric.metric_cluster
cafe.metric.metric_correlation
cafe.metric.metric_featureimp
plot
plot
cafe.plot.plot_trajectory
cafe.plot.plot_graph
cafe.plot.plot_stream
cafe.plot.plot_wrapper
cafe.plot.plot_pie
Development Document
Development Document
Contributing Guide
Contributing Guide
Method
Data
Metric
Visualization
Document
Release
Schedule
Schedule
Data
Method
Plot
Benchmark
Downstream Analysis
Release Notes
Contributors
References
Table of contents
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